Resistance and susceptibility QTL identified in a rice MAGIC population by screening with a minor-effect virulence factor from Xanthomonas oryzae pv. oryzae.
Identifieur interne : 000061 ( Main/Exploration ); précédent : 000060; suivant : 000062Resistance and susceptibility QTL identified in a rice MAGIC population by screening with a minor-effect virulence factor from Xanthomonas oryzae pv. oryzae.
Auteurs : Alejandra I. Huerta [États-Unis] ; Emily E. Delorean [États-Unis] ; Ana M. Bossa-Castro [États-Unis] ; Bradley W. Tonnessen [États-Unis] ; Chitra Raghavan [Philippines] ; Rene Corral [États-Unis] ; Álvaro L. Pérez-Quintero [États-Unis] ; Hei Leung [Philippines] ; Valérie Verdier [France] ; Jan E. Leach [États-Unis]Source :
- Plant biotechnology journal [ 1467-7652 ] ; 2020.
Abstract
Effective and durable disease resistance for bacterial blight (BB) of rice is a continuous challenge due to the evolution and adaptation of the pathogen, Xanthomonas oryzae pv. oryzae (Xoo), on cultivated rice varieties. Fundamental to this pathogens' virulence is transcription activator-like (TAL) effectors that activate transcription of host genes and contribute differently to pathogen virulence, fitness or both. Host plant resistance is predicted to be more durable if directed at strategic virulence factors that impact both pathogen virulence and fitness. We characterized Tal7b, a minor-effect virulence factor that contributes incrementally to pathogen virulence in rice, is a fitness factor to the pathogen and is widely present in geographically diverse strains of Xoo. To identify sources of resistance to this conserved effector, we used a highly virulent strain carrying a plasmid borne copy of Tal7b to screen an indica multi-parent advanced generation inter-cross (MAGIC) population. Of 18 QTL revealed by genome-wide association studies and interval mapping analysis, six were specific to Tal7b (qBB-tal7b). Overall, 150 predicted Tal7b gene targets overlapped with qBB-tal7b QTL. Of these, 21 showed polymorphisms in the predicted effector binding element (EBE) site and 23 lost the EBE sequence altogether. Inoculation and bioinformatics studies suggest that the Tal7b target in one of the Tal7b-specific QTL, qBB-tal7b-8, is a disease susceptibility gene and that the resistance mechanism for this locus may be through loss of susceptibility. Our work demonstrates that minor-effect virulence factors significantly contribute to disease and provide a potential new approach to identify effective disease resistance.
DOI: 10.1111/pbi.13438
PubMed: 32594636
Affiliations:
- France, Philippines, États-Unis
- Colorado, Languedoc-Roussillon, Occitanie (région administrative)
- Montpellier
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Huerta</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agricultural Biology, Colorado State University, Fort Collins, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author><author><name sortKey="Delorean, Emily E" sort="Delorean, Emily E" uniqKey="Delorean E" first="Emily E" last="Delorean">Emily E. Delorean</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agricultural Biology, Colorado State University, Fort Collins, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author><author><name sortKey="Bossa Castro, Ana M" sort="Bossa Castro, Ana M" uniqKey="Bossa Castro A" first="Ana M" last="Bossa-Castro">Ana M. Bossa-Castro</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agricultural Biology, Colorado State University, Fort Collins, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author><author><name sortKey="Tonnessen, Bradley W" sort="Tonnessen, Bradley W" uniqKey="Tonnessen B" first="Bradley W" last="Tonnessen">Bradley W. Tonnessen</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agricultural Biology, Colorado State University, Fort Collins, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author><author><name sortKey="Raghavan, Chitra" sort="Raghavan, Chitra" uniqKey="Raghavan C" first="Chitra" last="Raghavan">Chitra Raghavan</name><affiliation wicri:level="1"><nlm:affiliation>Division Genetics and Biotechnology, International Rice Research Institute, Manila, Philippines.</nlm:affiliation><country xml:lang="fr">Philippines</country><wicri:regionArea>Division Genetics and Biotechnology, International Rice Research Institute, Manila</wicri:regionArea><wicri:noRegion>Manila</wicri:noRegion></affiliation></author><author><name sortKey="Corral, Rene" sort="Corral, Rene" uniqKey="Corral R" first="Rene" last="Corral">Rene Corral</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agricultural Biology, Colorado State University, Fort Collins, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author><author><name sortKey="Perez Quintero, Alvaro L" sort="Perez Quintero, Alvaro L" uniqKey="Perez Quintero A" first="Álvaro L" last="Pérez-Quintero">Álvaro L. Pérez-Quintero</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agricultural Biology, Colorado State University, Fort Collins, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author><author><name sortKey="Leung, Hei" sort="Leung, Hei" uniqKey="Leung H" first="Hei" last="Leung">Hei Leung</name><affiliation wicri:level="1"><nlm:affiliation>Division Genetics and Biotechnology, International Rice Research Institute, Manila, Philippines.</nlm:affiliation><country xml:lang="fr">Philippines</country><wicri:regionArea>Division Genetics and Biotechnology, International Rice Research Institute, Manila</wicri:regionArea><wicri:noRegion>Manila</wicri:noRegion></affiliation></author><author><name sortKey="Verdier, Valerie" sort="Verdier, Valerie" uniqKey="Verdier V" first="Valérie" last="Verdier">Valérie Verdier</name><affiliation wicri:level="3"><nlm:affiliation>IRD, Cirad, IPME, Univ Montpellier, Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, Cirad, IPME, Univ Montpellier, Montpellier</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Leach, Jan E" sort="Leach, Jan E" uniqKey="Leach J" first="Jan E" last="Leach">Jan E. Leach</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agricultural Biology, Colorado State University, Fort Collins, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author></analytic><series><title level="j">Plant biotechnology journal</title><idno type="eISSN">1467-7652</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Effective and durable disease resistance for bacterial blight (BB) of rice is a continuous challenge due to the evolution and adaptation of the pathogen, Xanthomonas oryzae pv. oryzae (Xoo), on cultivated rice varieties. Fundamental to this pathogens' virulence is transcription activator-like (TAL) effectors that activate transcription of host genes and contribute differently to pathogen virulence, fitness or both. Host plant resistance is predicted to be more durable if directed at strategic virulence factors that impact both pathogen virulence and fitness. We characterized Tal7b, a minor-effect virulence factor that contributes incrementally to pathogen virulence in rice, is a fitness factor to the pathogen and is widely present in geographically diverse strains of Xoo. To identify sources of resistance to this conserved effector, we used a highly virulent strain carrying a plasmid borne copy of Tal7b to screen an indica multi-parent advanced generation inter-cross (MAGIC) population. Of 18 QTL revealed by genome-wide association studies and interval mapping analysis, six were specific to Tal7b (qBB-tal7b). Overall, 150 predicted Tal7b gene targets overlapped with qBB-tal7b QTL. Of these, 21 showed polymorphisms in the predicted effector binding element (EBE) site and 23 lost the EBE sequence altogether. Inoculation and bioinformatics studies suggest that the Tal7b target in one of the Tal7b-specific QTL, qBB-tal7b-8, is a disease susceptibility gene and that the resistance mechanism for this locus may be through loss of susceptibility. Our work demonstrates that minor-effect virulence factors significantly contribute to disease and provide a potential new approach to identify effective disease resistance.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">32594636</PMID><DateRevised><Year>2020</Year><Month>07</Month><Day>16</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1467-7652</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2020</Year><Month>Jun</Month><Day>28</Day></PubDate></JournalIssue><Title>Plant biotechnology journal</Title><ISOAbbreviation>Plant Biotechnol J</ISOAbbreviation></Journal><ArticleTitle>Resistance and susceptibility QTL identified in a rice MAGIC population by screening with a minor-effect virulence factor from Xanthomonas oryzae pv. oryzae.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1111/pbi.13438</ELocationID><Abstract><AbstractText>Effective and durable disease resistance for bacterial blight (BB) of rice is a continuous challenge due to the evolution and adaptation of the pathogen, Xanthomonas oryzae pv. oryzae (Xoo), on cultivated rice varieties. Fundamental to this pathogens' virulence is transcription activator-like (TAL) effectors that activate transcription of host genes and contribute differently to pathogen virulence, fitness or both. Host plant resistance is predicted to be more durable if directed at strategic virulence factors that impact both pathogen virulence and fitness. We characterized Tal7b, a minor-effect virulence factor that contributes incrementally to pathogen virulence in rice, is a fitness factor to the pathogen and is widely present in geographically diverse strains of Xoo. To identify sources of resistance to this conserved effector, we used a highly virulent strain carrying a plasmid borne copy of Tal7b to screen an indica multi-parent advanced generation inter-cross (MAGIC) population. Of 18 QTL revealed by genome-wide association studies and interval mapping analysis, six were specific to Tal7b (qBB-tal7b). Overall, 150 predicted Tal7b gene targets overlapped with qBB-tal7b QTL. Of these, 21 showed polymorphisms in the predicted effector binding element (EBE) site and 23 lost the EBE sequence altogether. Inoculation and bioinformatics studies suggest that the Tal7b target in one of the Tal7b-specific QTL, qBB-tal7b-8, is a disease susceptibility gene and that the resistance mechanism for this locus may be through loss of susceptibility. Our work demonstrates that minor-effect virulence factors significantly contribute to disease and provide a potential new approach to identify effective disease resistance.</AbstractText><CopyrightInformation>© 2020 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Huerta</LastName><ForeName>Alejandra I</ForeName><Initials>AI</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-2315-0365</Identifier><AffiliationInfo><Affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Delorean</LastName><ForeName>Emily E</ForeName><Initials>EE</Initials><AffiliationInfo><Affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bossa-Castro</LastName><ForeName>Ana M</ForeName><Initials>AM</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-6678-2277</Identifier><AffiliationInfo><Affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tonnessen</LastName><ForeName>Bradley W</ForeName><Initials>BW</Initials><AffiliationInfo><Affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Raghavan</LastName><ForeName>Chitra</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Division Genetics and Biotechnology, International Rice Research Institute, Manila, Philippines.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Corral</LastName><ForeName>Rene</ForeName><Initials>R</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-5087-7391</Identifier><AffiliationInfo><Affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pérez-Quintero</LastName><ForeName>Álvaro L</ForeName><Initials>ÁL</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-3530-8251</Identifier><AffiliationInfo><Affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Leung</LastName><ForeName>Hei</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Division Genetics and Biotechnology, International Rice Research Institute, Manila, Philippines.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Verdier</LastName><ForeName>Valérie</ForeName><Initials>V</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-5425-9454</Identifier><AffiliationInfo><Affiliation>IRD, Cirad, IPME, Univ Montpellier, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Leach</LastName><ForeName>Jan E</ForeName><Initials>JE</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-7252-4397</Identifier><AffiliationInfo><Affiliation>Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>#2018-67012-28007</GrantID><Agency>National Institute of Food and Agriculture</Agency><Country></Country></Grant><Grant><GrantID>#1523841</GrantID><Agency>National Science Foundation</Agency><Country></Country></Grant><Grant><GrantID>IOS-1444511</GrantID><Agency>National Science Foundation</Agency><Country></Country></Grant><Grant><Agency>Monsanto Beachell-Borlaug International Scholars Fellowship</Agency><Country></Country></Grant><Grant><GrantID>EU Grant PIOF-GA-2009-235457</GrantID><Agency>Marie Curie IOF Fellowship</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>06</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Plant Biotechnol J</MedlineTA><NlmUniqueID>101201889</NlmUniqueID><ISSNLinking>1467-7644</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">MAGIC</Keyword><Keyword MajorTopicYN="N">TAL effector</Keyword><Keyword MajorTopicYN="N">bacterial blight</Keyword><Keyword MajorTopicYN="N">loss of susceptibility</Keyword><Keyword MajorTopicYN="N">quantitative resistance</Keyword><Keyword MajorTopicYN="N">quantitative susceptibility</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>04</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>06</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>06</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>7</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>7</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>6</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32594636</ArticleId><ArticleId IdType="doi">10.1111/pbi.13438</ArticleId></ArticleIdList><ReferenceList><Title>References</Title><Reference><Citation>Antony, G., Zhou, J., Huang, S., Li, T., Liu, B., White, F. and Yang, B. 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Delorean</name><name sortKey="Leach, Jan E" sort="Leach, Jan E" uniqKey="Leach J" first="Jan E" last="Leach">Jan E. Leach</name><name sortKey="Perez Quintero, Alvaro L" sort="Perez Quintero, Alvaro L" uniqKey="Perez Quintero A" first="Álvaro L" last="Pérez-Quintero">Álvaro L. Pérez-Quintero</name><name sortKey="Tonnessen, Bradley W" sort="Tonnessen, Bradley W" uniqKey="Tonnessen B" first="Bradley W" last="Tonnessen">Bradley W. Tonnessen</name></country><country name="Philippines"><noRegion><name sortKey="Raghavan, Chitra" sort="Raghavan, Chitra" uniqKey="Raghavan C" first="Chitra" last="Raghavan">Chitra Raghavan</name></noRegion><name sortKey="Leung, Hei" sort="Leung, Hei" uniqKey="Leung H" first="Hei" last="Leung">Hei Leung</name></country><country name="France"><region name="Occitanie (région administrative)"><name sortKey="Verdier, Valerie" sort="Verdier, Valerie" uniqKey="Verdier V" first="Valérie" last="Verdier">Valérie Verdier</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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